Science has the answer, and the culprit is how we love that uniform red color:
Sometime before 1930, somewhere in America, a tomato grower noticed a plant that was producing distinctive fruit. These fruit turned red from stem to tip in a uniform way. They didn't have any of those bothersome green shoulders.Dan Charles of NPR's All Things Considered has the story: here.
It was a new mutation, and plant breeders saw it as the next big thing.
They called it the "uniform ripening" trait. In 1930, the agricultural experiment station in Fargo, N.D., released a new tomato variety containing this mutation. The variety was called All Red. [...]
The researchers discovered that this natural tomato gene, when it works properly, produces those green shoulders on tomatoes. The darker green color comes from the chlorophyll in plant structures called chloroplasts, which is what converts sunlight into sugars for the plant. In fact, those dark green shoulders were making those old tomatoes sweeter and creating more flavor.
The uniform-ripening mutation disabled this gene.
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